SubtiBank SubtiBank
yrdR [2019-08-28 10:07:53]
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yrdR [2019-08-28 10:07:53]

unknown
locus
BSU_26620
pI
9.97
mw
35.76 kDa
protein length
321 aa Sequence Blast
gene length
966 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    2,720,687 → 2,721,652

    The protein

    Protein family

  • [SW|EamA transporter family] (according to UniProt)

    • [SW|Domains]

  • [SW|EamA domain] 1 (aa 18-146) (according to UniProt)
  • [SW|EamA domain] 2 (aa 175-300) (according to UniProt)

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|F47A2C0A7478485BDAF90FA873F4B1D1F7C74004|yrdR]-[gene|4E42C126368C8995971518F33933D39FFD52BF64|yrzO]
    description
    [pubmed|22383849]

    sigma factors

  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]: sigma factor, [pubmed|30782632], in [regulon|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF regulon]
  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [pubmed|30782632], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]
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    Biological materials

    Mutant

  • MGNA-A860 (yrdR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/860 NBRP B. subtilis, Japan]
  • BKE26620 (Δ[gene|F47A2C0A7478485BDAF90FA873F4B1D1F7C74004|yrdR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE26620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATTCCCCTCCTTTT, downstream forward: _UP4_ACTTAGACAGTGGGGGATTT
  • BKK26620 (Δ[gene|F47A2C0A7478485BDAF90FA873F4B1D1F7C74004|yrdR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK26620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATTCCCCTCCTTTT, downstream forward: _UP4_ACTTAGACAGTGGGGGATTT